By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) ), I had this issue with PHP 7.4 build from source on Ubuntu 16.04 which I fixed by using the same way for OSX suggested above + installing dev package for libxml2-dev. git clone https://github.com/analogdevicesinc/libiio.git Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help Connect and share knowledge within a single location that is structured and easy to search. -- Check size of struct usb_functionfs_descs_head_v2 - done This release finally fixes symbol visibility on UNIX systems. it should tell you what environment variables you need to set in order to find libxml2 So, armed with these last two pieces of info, you should be able . Warning message: -- Looking for stdint.h - found By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Why does contour plot not show point(s) where function has a discontinuity? 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. [9] LC_ADDRESS=C LC_TELEPHONE=C By clicking Sign up for GitHub, you agree to our terms of service and Does a password policy with a restriction of repeated characters increase security? How can I start PostgreSQL server on Mac OS X? -- Looking for strerror_r What's the cheapest way to buy out a sibling's share of our parents house if I have no cash and want to pay less than the appraised value? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Is it safe to publish research papers in cooperation with Russian academics? 2. Makefile:129: recipe for target 'all' failed Command line sequence for building libiio: Why did DOS-based Windows require HIMEM.SYS to boot? Making statements based on opinion; back them up with references or personal experience. but setting the config in the R environment doesn't help: UPDATE I already had libxml2 installed in the system see: Make sure your system has the libxml-dev or libxml2-dev package installed. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. #include I have tried upgrading to 16.x but the upgrade process fails with errors need to zoom in into that another time. # Install XML Already on GitHub? -- Looking for libusb_get_version pthread library not found; support for threads will be disabled. BLAS: /home/kkarius/anaconda3/lib/R/lib/libRblas.so [ 42%] Building C object CMakeFiles/iio.dir/xml.c.o cd build Well occasionally send you account related emails. Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. How to check for #1 being either `d` or `h` with latex3? Here are my steps and the results. [ 16%] Building C object CMakeFiles/iio.dir/utilities.c.o To subscribe to this RSS feed, copy and paste this URL into your RSS reader. [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [ 22%] Building C object CMakeFiles/iio.dir/sort.c.o To reproduce your problem I installed Anaconda3 4.4.0 on RedHat 7.4, then: Use of this site constitutes acceptance of our User Agreement and Privacy ERROR: configuration failed for package XML. -- Looking for libusb-1.0 : Found 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. Thanks for contributing an answer to Ask Ubuntu! checking whether the C compiler works yes /usr/include/libxml2/libxml/encoding.h:31:26: fatal error: unicode/ucnv.h: No such file or directory Looking for job perks? Ask Ubuntu is a question and answer site for Ubuntu users and developers. -- The C compiler identification is GNU 7.4.0 Looks like the new markdown functionality is affecting the last section`# Install XML` with an `a href` tags, but looks normal when I try to edit the post. sequential (one-line) endnotes in plain tex/optex. I'm a bit at a loss here, xsltproc is /usr/bin/xsltproc. Why don'y you use the conda package for CRAN's XML (called r-xml)? Checking directory of LIBXML_INCDIR Your post saved me, thank you! [ 7%] Building C object CMakeFiles/iio.dir/channel.c.o Trying to install the XML package as follows I get the error configure: error: "libxml not found". What differentiates living as mere roommates from living in a marriage-like relationship? no checking for xmlParseFile in -lxml. The problem in this case is the configure script incorrectly judges you to be using libxml 1 from parsing the include directory. libffi: Unfortunately, however, this appears not to be the case for libxml2 for some reason. Fix use-after-free in xmlParseContentInternal() (David Kilzer), xmllint: Fix use-after-free with --maxmem, parser: Fix OOB read when formatting error message, entities: Rework entity amplification checks, parser: Fix regression in xmlParserNodeInfo accounting, Fix memory errors in code handling malloc failures, xmlParseStartTag2() contains typo when checking for default definitions for, error: Make sure that error messages are valid UTF-8, xmllint: Validate --maxmem integer option, xmlValidatePopElement() can return invalid value (-1) (David Kilzer), parser: Rework EBCDIC code page detection, parser: Limit name length in xmlParseEncName, parser: Rework shrinking of input buffers, html: Rely on CUR_CHAR to grow the input buffer, parser: Rely on CUR_CHAR/NEXT to grow the input buffer, valid: Make xmlValidateElement non-recursive, html: Fix quadratic behavior in htmlParseTryOrFinish, xmllint: Fix memory leak with --pattern --stream, parser: Stop calling xmlParserInputShrink, xinclude: Fix quadratic behavior in xmlXIncludeLoadTxt, xinclude: Abort immediately if max depth was exceeded, parser: Lower entity nesting limit with XML_PARSE_HUGE, parser: Dont increase depth twice when parsing internal entities, parser: Improve detection of entity loops, parser: Only report a single entity error, libxml.h: Remove dubious definition of LIBXML_STATIC, encoding: Remove unused variable xmlDefaultCharEncodingHandler, parser: Merge misc, prolog and epilog cases in push parser, parser: Fix consumed accounting when switching encodings, html: Fix check for end of comment in push parser, parser: Fix push parser with 1-3 byte initial chunk, parser: Rewrite push parser boundary checks, reader: Switch to xmlParserInputBufferCreateMem, html: Dont escape ASCII chars in href attributes, parser: Dont call xmlSHRINK from push parser, parser: Ignore cdata argument in xmlParseCharData, parser: Rework push parser parser progress checks, io: Fix a few integer overflows in I/O statistics, io: Rework xmlParserInputBufferGrow with encodings, io: Check for memory buffer early in xmlParserInputGrow, parser: Fix error message in xmlParseCommentComplex, Bypass proxy in nanoHTTP for hosts in no_proxy (Markus Jrg), schemas: Fix infinite loop in xmlSchemaCheckElemSubstGroup, xinclude: Remove inefficient refcounting scheme, xmllint: Improve handling of empty XPath node sets, parser: Fix potential memory leak in xmlParseAttValueInternal, error: Dont use initGenericErrorDefaultFunc, xpath: Lower XPath recursion limit on Windows, Make xmlNewSAXParserCtx take a const sax handler, Remove internal macros from parserInternals.h, Move some HTML functions to correct header file, xmllint: Stop calling xmlSAXDefaultVersion, Introduce xmlNewSAXParserCtxt and htmlNewSAXParserCtxt, Dont mess with parser options in htmlParseDocument, Remove useless call to htmlDefaultSAXHandlerInit, Remove htmlDefaultSAXHandler from non-SAX1 build, Dont initialize SAX handler in htmlReadMemory, Fix htmlReadMemory mixing up XML and HTML functions, Dont use default SAX handler to report unrelated errors, Create stream with buffer in xmlNewStringInputStream, xzlib: Fix implicit sign change in xz_open, parser: Simplify calculation of available buffer space, parser: Use size_t when subtracting input buffer pointers, parser: Check for integer overflow when updating checkIndex, xpath: Fix harmless integer overflow in xmlXPathTranslateFunction, regexp: Add sanity check in xmlRegCalloc2, encoding: Cast toupper argument to unsigned char, buf: Fix return value of xmlBufGetInputBase, parser: Remove useless ent->etype test in xmlParseReference, parser: Remove useless ent->children tests in xmlParseReference, xmlexports.h: Disable docs for internal macro XMLPUBLIC, parser: Simplify xmlParseConditionalSections, io: Rearrange code in xmlSwitchInputEncodingInt, warnings: Fix -Wstrict-prototypes warning, warnings: Remove set-but-unused variables, Fix unused variable warning in python/types.c, Dont use sizeof(xmlChar) or sizeof(char), parser: Deprecate more internal functions, parser: Deprecate some parser input functions, parser: Deprecate xmlString*DecodeEntities, threads: Deprecate some internal functions, Generate deprecation warnings for old SAX API, Mark more functions setting globals as deprecated, autoconf: Warn about outdated C compilers, catalog.c: Silence a cast warning on VS 2022 (Luk Tyrychtr), xstc/fixup-tests.py: port to Python 3 (Ross Burton), xstc/fixup-tests.py: unify whitespace (Ross Burton), Remove hacky heuristic from b2dc5675 (Alex Richardson), Avoid creating an out-of-bounds pointer by rewriting a check, Correctly relocate internal pointers after realloc() (Alex Richardson), Visual Studio builds: Allow silencing deprecation warnings (Chun-wei Fan), Visual Studio: Define XML_DEPRECATED (Chun-wei Fan), sources: Silence C4013 warnings on Visual Studio (Chun-wei Fan), python/setup.py.in: Improve Windows import patching (Chun-wei Fan), Fix Windows compiler warnings in python/types.c, Fix libxml_PyFileGet with stdout on macOS, xmlexports.h: Remove LIBXML_FASTCALL optimization, Remove XMLCALL and XMLCDECL macros from public headers, Remove RPM build, Makefile.tests, README.tests, libxml.m4: deprecate AM_PATH_XML2, wrap PKG_CHECK_MODULES instead, libxml.m4: fix -Wstrict-prototypes (Sam James), cmake: Build static library with -DLIBXML_STATIC, autotools: Dont use version script on Windows, autotools: Only add network libraries if HTTP/FTP enabled, python: Dont output missing generators during build, Remove HAVE_WIN32_THREADS configuration flag, Use AM_CFLAGS and AM_LDFLAGS consistently, configure.ac: Remove checks for unused programs, Consolidate simple API modules in configure.ac, Fix dependency resolution in configure.ac, Cleanup distribution settings in Makefile.am, testchar: Add test for memory pull parser with encoding, fuzz: Also test init function of URI fuzzer, gitlab-ci: Enable all integer sanitizers, fuzz: Support variable integer sizes in fuzz data, fuzz: Fix duplicate detection in fuzzEntityRecorder, fuzz: Set filename in xmlFuzzEntityLoader, python/tests/reader2: use absolute paths everywhere (Ross Burton), python/tests/reader2: always exit(1) if a test fails (Ross Burton), testModule: exit if the module cant be opened (Ross Burton), CI: disable modules in gcc:static build (Ross Burton), tests: Check that xmlInitParser doesnt allocate memory, tests: Fix use-after-free in Python tests, gitlab-ci: Make Test-Msvc exit if ctest fails, gitlab-ci: Treat compiler warnings as errors on MSVC, test: Add test for push parser boundaries, gitlab-ci: Upgrade image to Ubuntu 22.10, reenable MSan, xinclude: Dont create result doc for test with errors, gitlab-ci: Allow cast-align warnings from clang, gitlab-ci: Move MSVC test to separate script, gitlab-ci: Consolidate CMake test scripts, gitlab-ci: Only install MinGW autotools if needed, gitlab-ci: Only install cmake MinGW package if needed, Disable fuzzer tests if glob.h wasnt found, html: Fix htmlInitAutoClose documentation, doc: Mention new location of XML catalog as breaking change, doc: Mention potentially breaking changes in NEWS, doc: Remove xmlDllMain from documentation and version script, doc: Document xmllint --nodict and --pedantic, Support comments for global variables in documentation, Dont index anything in DOC_DISABLE sections. Order relations on natural number objects in topoi, and symmetry. If pkg-config The pgModeler instruction includes "To check if the library is correctly installed" run this command: pkg-config libxml2.0 --cflags --libs Policy. Making statements based on opinion; back them up with references or personal experience. CMake Warning at bindings/python/CMakeLists.txt:4 (find_package): Yes, the *-dev packages don't exist in Arch Linux, so I can't forget it. What is this brick with a round back and a stud on the side used for? DST Root CA X3 Expiry Invalid Certificate Error on Chrome [Fix], How to fix Failed to synchronize cache for repo appstream, Fix Fatal error: Uncaught exception Exception with message Google PHP API Client requires the CURL PHP extension, Install Qiskit on Windows 10 and Setup Jupyter Notebook. For Microsoft Windows 64-bit Emacs, the file nt/INSTALL.w64 says this: Run msys2_shell.bat in your MSYS2 directory and you will see a BASH window opened. [ 13%] Building C object CMakeFiles/iio.dir/buffer.c.o -- Found FLEX: /usr/bin/flex (found version "2.6.4") Thanks for contributing an answer to Stack Overflow! to your account, phpenv checking for suffix of executables privacy statement. Malicious files should be detected reliably now it should tell you what environment variables you need to set in order to find libxml2 So, armed with these last two pieces of info, you should be able to work out what you need to set and how. A freelance writer on latest trends in technology, gadget reviews, How to's and many more. it will tell you the full paths to all the files in that package. This time, it was XML. Understanding the probability of measurement w.r.t. -- Detecting C compiler ABI info -- Check for working C compiler: /usr/bin/cc -- works "Python_DIR" to a directory containing one of the above files. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. Make sure your system has the libxml-dev or libxml2-dev package installed. checking for gcc option to accept ISO C89 none needed The XInclude engine has been reworked to properly support nested includes. Which was the first Sci-Fi story to predict obnoxious "robo calls"? What does "up to" mean in "is first up to launch"? is a Web Designer and content creator. It only takes a minute to sign up. Hello- I found this discussion on the mailing list archives: >On Fri, 6 Oct 2000, Pallentin wrote: >> Hi there, >> I try to install ver. Not the answer you're looking for? : % xsltproc --version Using libxml . I used sudo apt-get install libxml2-dev and it seemed to install ok. With. Realistically they should be interchangeable packages. I had the same error but libxml2-dev was already installed so that didn't help. checking how to run the C preprocessor gcc -E [ 15%] Building C object CMakeFiles/iio.dir/context.c.o ~. It should be /usr/include/libxml2. For trying out wordpress 3.8 installation, i had to upgrade my php installation from 5.1.6 to 5.2.4 or later version. On whose turn does the fright from a terror dive end? One other thing, changing the PATH produces following error with CMake: CMake Warning at CMakeLists.txt:289 (message): By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Well occasionally send you account related emails. How can I fix this? USE_XML2 = yes checking whether we are cross compiling no I've updated the README to explicitly mention this dependency. To learn more, see our tips on writing great answers. checking how to run the C preprocessor gcc -E Also: shouldn't not finding libxml already throw an error in cmake? How can I control PNP and NPN transistors together from one pin? I have checked the pathname for sysroot and it is most certainly correct. checking for suffix of object files o Was there any resolution to this problem? I don't (yet) know why, but I found out what is putting that in my PATH in the first place: xdm. [ 26%] Building C object CMakeFiles/iio.dir/scan.c.o Check libxml2 installation on CentOS/RHEL/Fedora. In order to get the libraries and header files necessary for compiling and building, there is usually a separate libXXX-dev package (-dev indicating that the packages are for development). Checking directory of LIBXML_INCDIR Located parser file /opt/lampp/include/parser.h Checking for 1.8: /opt/lampp/include Using libxml2. That will install the build dependencies for the btrfs-tools version in your package repository, rather than for the newer version you're trying to build. devtools::install("./XML", [ 19%] Building C object CMakeFiles/iio.dir/buffer.c.o Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. The text was updated successfully, but these errors were encountered: The issue here isn't that you're missing xsltproc, but that you're missing the Autotools macro AX_PROG_XSLTPROC which looks for xsltproc. Does a password policy with a restriction of repeated characters increase security? How about saving the world? What is scrcpy OTG mode and how does it work? Please check your libxml2 installation. How to automatically extend windows virtual disk size [Openstack], No such file or directory c++ Error [CentOS], How to configure Open vSwitch bridge for OpenStack, Too many connections for neutron-db-manage [MySQL], How to manually install higher version of PIP for Python v2.7, [CentOS 7]: Yum install python-pip | No package python-pip available, [OpenStack noVNC]: Code 400, message Client must support binary or base64 protocol [Solved], [CentOS Stream 8]: Error: Unknown repo epel [Solved]. -- Detecting C compile features Can't find ImageMagick with pkg-config on Ubuntu 16.04. The version nodes are kept so it I had libxml2 installed but not libxml2-devel. [ 2%] Building C object CMakeFiles/iio.dir/backend.c.o So you have to specify the location of libxml2 when you run ./configure, just as brew and libvisio tell you to: (The paths on your system may vary, so do check! and false positives should be reduced. from /usr/include/libxml2/libxml/globals.h:18, Package libxml2.0 was not found in the pkg-config search path. Can the game be left in an invalid state if all state-based actions are replaced? -- Performing Test HAS_O_TMPFILE I think there is a problem with the environment variables when you install R through conda. Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? So, why would I get "No package 'libxml2.0' found", and how might I fix this?
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